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Opiniones y comentarios de aprendices correspondientes a Plant Bioinformatics por parte de Universidad de Toronto

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The past 15 years have been exciting ones in plant biology. Hundreds of plant genomes have been sequenced, RNA-seq has enabled transcriptome-wide expression profiling, and a proliferation of "-seq"-based methods has permitted protein-protein and protein-DNA interactions to be determined cheaply and in a high-throughput manner. These data sets in turn allow us to generate hypotheses at the click of a mouse. For instance, knowing where and when a gene is expressed can help us narrow down the phenotypic search space when we don't see a phenotype in a gene mutant under "normal" growth conditions. Coexpression analyses and association networks can provide high-quality candidate genes involved in a biological process of interest. Using Gene Ontology enrichment analysis and pathway visualization tools can help us make sense of our own 'omics experiments and answer the question "what processes/pathways are being perturbed in our mutant of interest?" Structure: each of the 6 week hands-on modules consists of a ~2 minute intro, a ~20 minute theory mini-lecture, a 1.5 hour hands-on lab, an optional ~20 minute lab discussion if experiencing difficulties with lab, and a ~2 minute summary. Tools covered [Material updated in June 2022]: Module 1: GENOMIC DBs / PRECOMPUTED GENE TREES / PROTEIN TOOLS. Araport, TAIR, Gramene, EnsemblPlants Compara, PLAZA; SUBA4 and Cell eFP Browser, 1001 Genomes Browser Module 2: EXPRESSION TOOLS. eFP Browser / eFP-Seq Browser, Araport, Genevestigator, TravaDB, NCBI Genome Data Viewer for exploring RNA-seq data for many plant species, MPSS database for small RNAs Module 3: COEXPRESSION TOOLS. ATTED II, Expression Angler, AraNet, AtCAST2 Module 4: PROMOTER ANALYSIS. Cistome, MEME, ePlant Module 5: GO ENRICHMENT ANALYSIS AND PATHWAY VIZUALIZATION. AgriGO, AmiGO, Classification SuperViewer, TAIR, g:profiler, AraCyc, MapMan (optional: Plant Reactome) Module 6: NETWORK EXPLORATION. Arabidopsis Interactions Viewer 2, ePlant, TF2Network, Virtual Plant, GeneMANIA...

Principales reseñas


14 de sep. de 2022

That was so insightful and learning course about plants bioinformatic out of basic methods.

Also help in working project to give meaningful answers with validation


9 de mar. de 2019

Very good course for mastering bioinformatics skills. Genetics and molecular biology students/professionals should take this course to augment their research skills.

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26 - 47 de 47 revisiones para Plant Bioinformatics

por Nida F

4 de jul. de 2020

por Anushka B T

6 de jul. de 2020

por Will H

12 de feb. de 2019

por Deluxeani K

12 de jun. de 2021

por Kartavya M

28 de mar. de 2021

por Daniel B

28 de jun. de 2020

por Achintha E

5 de oct. de 2020

por Josué S P

2 de abr. de 2019

por La V M

21 de mar. de 2021

por Dinesh G

4 de abr. de 2019

por Nelson E V V

16 de ene. de 2019


16 de sep. de 2020

por merlin

26 de ago. de 2020

por OMAR C H

31 de mar. de 2022

por Edison R

24 de dic. de 2020

por amir g s

22 de oct. de 2019

por Nammi S K

16 de jun. de 2020

por Muhammad N

2 de nov. de 2019


2 de may. de 2020

por Sonali B

2 de jun. de 2022


20 de mar. de 2019

por Dylan S

11 de ene. de 2021