Acerca de este Curso

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This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.

Aprox. 14 horas para completar
Inglés (English)

Qué aprenderás

  • Learn how to assemble a bacterial genome

  • Learn how to annotate a bacterial genome

  • Learn how to generate a phylogenetic tree from a set of bacterial genomes

  • Learn how to perform basic comparative analyses of a set of bacterial genomes

Certificado para compartir
Obtén un certificado al finalizar
100 % en línea
Comienza de inmediato y aprende a tu propio ritmo.
Fechas límite flexibles
Restablece las fechas límite en función de tus horarios.
Nivel intermedio

This class is geared towards biologists, bacteriologists, and bioinformaticians with a basic knowledge of comparative genomics.

Aprox. 14 horas para completar
Inglés (English)

ofrecido por

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Universidad de Virginia

Programa - Qué aprenderás en este curso

Semana
1

Semana 1

1 hora para completar

Introduction

1 hora para completar
7 videos (Total 42 minutos)
7 videos
History of PATRIC and the BRC program3m
PATRIC overview - tabs and information16m
Registering and logging on to PATRIC2m
PATRIC workspace-Create Shared Workspace6m
Sharing a genome with other PATRIC users4m
Copying a genome annotation job to a shared workspace3m
1 ejercicio de práctica
PATRIC overview, login, and workspace sharing30m
Semana
2

Semana 2

1 hora para completar

Assembly

1 hora para completar
7 videos (Total 49 minutos)
7 videos
Uploading read files to the workspace for assembly11m
Submitting reads to the Genome Assembly Service8m
Selecting assembly strategies and submitting the assembly job8m
Monitoring the assembly job and reviewing job results7m
Genome coverage in Genome Report2m
Assembly questions and getting help with problems4m
1 ejercicio de práctica
Review of genome assembly30m
Semana
3

Semana 3

2 horas para completar

Annotation

2 horas para completar
7 videos (Total 77 minutos)
7 videos
Uploading contig files to the PATRIC workspace12m
Submitting a job to the PATRIC Genome Annotation Service7m
Reviewing the resulting Genome Report19m
Downloading the generated files 11m
Viewing your annotated genome in PATRIC15m
Finding help or reporting problems with the service5m
1 ejercicio de práctica
Review of genome annotation30m
Semana
4

Semana 4

2 horas para completar

Comprehensive Genome Analysis

2 horas para completar
10 videos (Total 101 minutos)
10 videos
Submitting a job using reads16m
Submitting contigs8m
Full Genome Report13m
Job Results11m
Assembly results11m
Annotation results12m
Viewing annotated genome12m
Finding help and citing5m
Hybrid Assembly Summary8m
1 ejercicio de práctica
Review of the Comprehensive Genome Analysis Service30m

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